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File Cytoprov (To be stored on an EXCEL or QUATTRO PRO spreadsheet) |
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Column A: Code Code of the provenance = link 1. This code is link 1 and is also present in File Provenance, Proveco and should therefore be the same as in these files. The code of a provenance is composed of two letters and a number in sequence. The two letters correspond to the country code (where the provenance is tested, AT: Austria, BE: Belgium, DK: Denmark, FR: France, DE: Germany, NL: Netherlands, ES: Spain, GB: United Kingdom) and the numbers to a number in sequence. Example : FR136 is provenance 136 tested in France. For participants P1, P2, P3, P4 and P7, hosting provenance of the Sören Madsen collection, the 22 first numbers should be reserved to the provenance of the Madsen collection, following the codes in the booklet " International trial with Q. petraea " by Madsen. For different participants of the same country (P2 and P3 for example, or P7 and P11) should agree on the numbers to be given to the provenances. In the case of Germany, P2 would number the provenances from DE-0001 to DE-0200 and P3 from DE-0201 to DE-0500... |
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Column B: # tree Number in sequence (from 1 to 5) of the individual tree analysed in that provenance |
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Column C: Institute collecting Code of the institute collecting the samples = Link 3. This code is Link3 and is also present in file Cytogrid and Test, and should therefore be the same as in files Cytogrid and Test Codes of the Institutes correspond to Participant number with the EU project) are as follows: P1: INRA, P2: NFV, P3: BFH, P4: FC, P5: DLO,P6: WSL, P7: FLR,P8: ARCS, P9:NERC(ITE), P10: CIMA-KT, P11: ARB, P12: UDESAM |
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Column D: Name Usual name of the provenance. It corresponds also to column2 in file Provenance |
Column E : Species
In latin. Use official names and no synonyms;
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Official name |
Synonyms |
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Q. robur |
Q. pedunculata |
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Q. petraea |
Q. sessiliflora, Q. mas |
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Q. pubescens |
Q. congesta |
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Q.virgiliana |
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Q.polycarpa |
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Q.dalechampii |
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Q. pyrenaica |
Q. toza, Q. subpyrenaica |
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Column F: Test Code of the test : link 2. This code is link 2 and is also present in files Test, Testeco and Provenance, and should therefore be the same as in files Test, Testeco and Provenance The code of the test comprises three components : * the letter T * two letters corresponding to the country where the test is planted (AT: Austria, BE: Belgium, DK: Denmark, FR: France, DE: Germany, NL: Netherlands, ES: Spain, GB: United Kingdom) * a number in sequence given by the institute. Different participants of the same country hosting tests (P2 and P3 for Germany, and P7 and P11 for Denmark) agree on the numbers given. For example, P2 would number his tests from T-DE-1 to T-DE-10 and P3 from T-DE-11 to T-DE-20. For example, T-DE-06 would be test 6 established in Germany. |
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Column G: Institute analysing Code of the institute doing the molecular analysis = Link 3. This code is Link3 and is also present in file Cytogrid and Test, and should therefore be the same as in files Cytogrid and Codes of the Institutes correspond to Participant number with the EU project) are as follows: P1: INRA, P2: NFV, P3: BFH, P4: FC, P5: DLO,P6: WSL, P7: FLR,P8: ARCS, P9:NERC(ITE), P10: CIMA-KT, P11: ARB, P12: UDESAM |
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Column H: # Extraction Provide your own extraction number so that if particular verifications/complements are needed it is possible to exchange easily DNA extracts |
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Column I: Haplotype Designation is explained in the documents provided during the technical meeting and is available on filr haplotype. In case a new haplotype has been found, inform Remy Petit so that a new identification code will be given to the new haplotype. |
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